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The list of SPM extensions is also available as an RSS feed.
Note: All email addresses in this page have their "@" replaced with "_at_" to minimize spam. Toolboxes: AAL | AAL2 | ACID | AICHA | ALI | ALVIN | AMAT | Analyze Movie | Anatomy | AQu A | Art Repair | aslm | ASLtbx | at4fmri | aws4SPM | BFAST3D | Brain Net Viewer | Brainnetome | Brede Query | Bruker2nifti | bspmview | CAT | CCAf MRI | CLASS | Clinical | Complexity | conn | Conn Ex T | CPCA | DAi SS | DICOMCD_Import | Diffusion_II | DPABI | DPARSF | DRIFTER | EMS | Extract Vals | FASL | FAST | f ECM | FDR | Field Map | fieldmap_undistort | Field Trip | f MRIPower | f OSA | g PPI | Graph Var | Grocer | HV | IBASPM | i Brain AT | i Brain LT | INRIAlign | IBZM_tool | ISAS | lead-dbs | lesion_gnb | LI | Log Transform | Mantis | MARINA | MARS | Mars Bar | MASCOI | mf Box | Masking | Masks | MIP-C | MM | multifocal | MRTool_IIC | MRTool_MM | MRM | NIRS-SPM | NS | PETPVE12 | Ortho | Phys IO | PSPM | REST | rfxplot | Robust WLS | SAf E | SAMIT | SCRalyze | SDM | Simple ROIBuilder | Sn PM | spm_wavelet | SPMd | SPMMouse | SSM | SUIT | Surf Rend | Sw E | TDT | TOM | UF2C | Unwarp2 | Var Tbx | Volumes | WBM | WSPM | WFU_Pick Atlas | xj View | XMLTools | ASLtbx | BENtbx | SVRLSMtbx | GIFT Utilities: Ave LI | Brain Magix | Bruker2Analyze | CBMG-Tools | Design_Magic | dicom2nifti | Dyn PET | Easy_ROI | Easy_Volumes | FDRill | Fluctuation | f Toolbelt | FAD | GA | GE2SPM | JG | L2S | log_roi_batch | LMGS | Matlab TFCE | Motion | mri_toolbox | MSU | Orth1 | PCT | pvconv | r2agui | SEM | slice_overlay | TSDiff Ana | TSU | i TT | VBMtools | VIS | vision To SPM | Voi Tool Batch Utilities: aa | Auto SPET | Batch AAL | KULscripts | parallelize_matlabbatch | spm_segment | SPMJobs12 | spm2-batch | spm2batch | spm2Batch | spmbatch | spmjob | X_batch | zephyr Templates: Baboon | Brain Dev_Atlas | Cerebellum | CCHMC_Pediatric | Dementia_PET | Ovine | Macaca_Fascicularis | Macaca_Fascicularis_PET | Macaca_Mulatta | Macaca_Nemestrina | Rat | SPMtemplates | UNC_Pediatric | Zebra_Finch Summary: Implementation of a new parcellation of the orbitofrontal cortex in the automated anatomical labeling atlas, as described in Rolls et al. Author: Gin URL: Summary: The Artefact correction in diffusion MRI (ACID) toolbox is an academic software toolkit for pre-processing of diffusion MRI data, estimation of DTI indices and normalisation of DTI index maps, which fully integrates into the batch system of SPM8.
Author: Siawoosh Mohammadi URL: Summary: ALI is a research tool for lesion delineation and spatial normalization for patients with brain damage.
It uses the unified normalisation-segmentation algorithm with an explicit extra prior for the lesion that is refined iteratively in a patient-specific manner.
If you notice inaccuracies or out of date links, please email the SPM manager.
Viewing tools allow quality checking at every step in the analysis.
You will find here a list of these tools classified between Toolboxes, Utilities, Batch Systems and Templates.
The distinction between Toolboxes and Utilities can be blurry, but for the purposes of this page we define a toolbox to be a utility that can be completely operated via a graphical user interface.
Lesions are then defined as a set of outlier voxels while taking into account the typical variability in anatomy in healthy controls. Author: Mohamed Seghier URL: Contact email above Summary: Segmentation of the lateral ventricles validated in infants, adults and patients with Alzheimer's disease. Author: Matthew Kempton URL: Summary: AMAT is a matlab program which lets you search through the coordinates reported in lots of f MRI papers. Author: Antonia Hamilton URL: This toolbox integrates probabilistic cytoarchitectonic maps derived from human post-mortem studies into the SPM environment and provides a wide range of different approaches to analyse structure / function correlations.
It is designed to answer the frequently asked question: what the *? Author: Simon Eickhoff URL: Toolbox/SPMAnatomy Toolbox_Summary: AQu A is a tool that helps you in the assessment process for the quality of the acquired f MRI data, identifying images with movement and other artefacts, so that they do not compromise the experimental analysis. Lull URL: Summary: Special methods to improve the f MRI analysis of high motion pediatric and clinical subjects.Author: Paul Mazaika URL: ASLtbx is a Matlab and SPM based toolkit for processing arterial spin labeling (ASL) perfusion MRI data.